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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3280389_3281523_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3280389 - 3281523
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTATTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
GTGACTTGAATT
Flanking Amino Acid:
AVLELNASNDRGIDVVRNKI
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.8
75
35.2
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
79.5
0.66
1
72.8
41.7
Minor 5ss
28.6
-2.5
3.4
37.5
47.2
Minor BPS
57.5
0.31
1.5
70.31
40.8

Associated Gene:

Gene:
RFC2
Ensembl Gene ID:
ENSAPLG00000009389
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009836
3278429 - 3284978
6550