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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3281626_3282189_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3281626 - 3282189
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTGT
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCTGTCCTAACT
Flanking Amino Acid:
HKIIILDEADSMTDGAQQAL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.3
40
Major BPS
72
0.55
1
71.8
31.4
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
40.2
-1.1
3.2
58.8
45.7
Minor BPS
61.7
0.45
1.8
79.84
42.4

Associated Gene:

Gene:
RFC2
Ensembl Gene ID:
ENSAPLG00000009389
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009836
3278429 - 3284978
6550