About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3282894_3283262_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3282894 - 3283262
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGGG
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AATGACTGAAGT
Flanking Amino Acid:
IFTAQGDMRQALNNLQSTYS
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
54.1
43.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
94.9
1.01
0.5
91.6
19.6
Minor 5ss
27.8
-2.5
3.6
38
46.9
Minor BPS
47
-0.1
2
65.71
44.2

Associated Gene:

Gene:
RFC2
Ensembl Gene ID:
ENSAPLG00000009389
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009836
3278429 - 3284978
6550