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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3284379_3284867_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3284379 - 3284867
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAA
U12 Branch Point Sequence:
TTTTCCTCATCA
Flanking Amino Acid:
PEYLKLEFIKEIGYTHMKIA
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
82.9
0.74
0.8
82.8
27.4
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
69.5
0.61
1.8
83.94
36.4

Associated Gene:

Gene:
RFC2
Ensembl Gene ID:
ENSAPLG00000009389
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009836
3278429 - 3284978
6550