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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3310028_3310148_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3310028 - 3310148
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTCC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAA
U12 Branch Point Sequence:
GTAGTCTGAAAA
Flanking Amino Acid:
SSMDFREPTEEERAQRPRLQ
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.1
36.7
Major BPS
64.4
0.36
1.2
57.3
41.7
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
44.5
-0.6
2.9
60
44.7
Minor BPS
49.2
-0
1.6
59.08
40

Associated Gene:

Gene:
EIF4H
Ensembl Gene ID:
ENSAPLG00000009166
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009559
3309891 - 3315853
5963
ENSAPLT00000023358
3309891 - 3315853
5963