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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3312229_3312874_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3312229 - 3312874
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTTTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TAGACCTGAACA
Flanking Amino Acid:
FRKGGGPDDRGMGGGSRESR
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
80.2
28.1
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
79.3
0.66
0.8
72.8
37.5
Minor 5ss
39.4
-1.2
2.9
52.6
44.6
Minor BPS
65
0.47
1.5
70.82
40.7

Associated Gene:

Gene:
EIF4H
Ensembl Gene ID:
ENSAPLG00000009166
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009559
3309891 - 3315853
5963