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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3313149_3314115_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3313149 - 3314115
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTTCTTACAG
Flanking Amino Acid:
VRDKETDKFKGFCYVEFDEV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
92.6
0.96
0.6
87.8
22.4
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
56.3
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
EIF4H
Ensembl Gene ID:
ENSAPLG00000009166
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023358
3309891 - 3315853
5963
ENSAPLT00000009559
3309891 - 3315853
5963