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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3329827_3330770_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3329827 - 3330770
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTACTGAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GCTTCCTTACTG
Flanking Amino Acid:
RQKQNPENVNKTQHKIARLR
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
61.3
0.26
1.1
63.3
36.4
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
62.1
0.24
1.7
63.65
44.7

Associated Gene:

Gene:
MYBBP1A
Ensembl Gene ID:
ENSAPLG00000008534
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008925
3329408 - 3381657
52250