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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3332511_3333182_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3332511 - 3333182
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAATTGTGAAAG
Flanking Amino Acid:
FTKDQREAWERTLQSVKNLQ
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
93.4
0.98
0.5
92.6
17.4
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
44.2
-0.5
2.2
51.51
42.3

Associated Gene:

Gene:
MYBBP1A
Ensembl Gene ID:
ENSAPLG00000008534
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008925
3329408 - 3381657
52250