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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3337554_3338349_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3337554 - 3338349
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
AGCTCAGTAACT
Flanking Amino Acid:
KILRRDFKIKVLDLIEVFLS
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.8
31.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
86.2
0.81
0.8
80.7
36.7
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
49.8
0.07
2.3
72.4
44.1

Associated Gene:

Gene:
MYBBP1A
Ensembl Gene ID:
ENSAPLG00000008534
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008925
3329408 - 3381657
52250