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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_33620_36051_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33620 - 36051
Intron Length:
2432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCAATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAATT
Flanking Amino Acid:
MNLHPESFQLDKDDKHVRQV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.6
0.69
0.9
78.7
33.5
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
64.6
0.54
1.5
79.05
38

Associated Gene:

Gene:
VPS37D
Ensembl Gene ID:
ENSAPLG00000025155
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047429
31520 - 45566
14047