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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_33620_38556_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33620 - 38556
Intron Length:
4937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAA
U12 Branch Point Sequence:
AATGCAATAACC
Flanking Amino Acid:
MNLHPESFQLGWPKDCSEIP
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
58
0.2
1.3
69.6
37.5
Major PPT
81.6
0.71
0.8
73.4
37.1
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
49.4
-0
2
64.65
40.1

Associated Gene:

Gene:
VPS37D
Ensembl Gene ID:
ENSAPLG00000025155
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001797
31520 - 45566
14047