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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3378366_3379447_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3378366 - 3379447
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
TCACCCTGCACG
Flanking Amino Acid:
NFLLKTVTQQKLPVELMELD
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.6
36.5
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
82.6
0.73
0.8
77
31.6
Minor 5ss
25.3
-2.8
3.1
30.1
43.1
Minor BPS
47.8
-0.3
2
54.76
45.7

Associated Gene:

Gene:
MYBBP1A
Ensembl Gene ID:
ENSAPLG00000008534
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008925
3329408 - 3381657
52250