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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3409018_3418773_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3409018 - 3418773
Intron Length:
9756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTCTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATCTAAGTGACT
Flanking Amino Acid:
DAGSPYLIGFISDLIRQSTK
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
73.6
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
79.9
0.67
0.7
73.3
31.6
Minor 5ss
37.9
-1.4
3.3
56.6
41.9
Minor BPS
44.3
-0.3
2.4
67.57
43

Associated Gene:

Gene:
SPNS2
Ensembl Gene ID:
ENSAPLG00000008372
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008691
3408850 - 3533675
124826