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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3418873_3425428_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3418873 - 3425428
Intron Length:
6556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATTT
Flanking Amino Acid:
NWAITADILMYVVIPTRRAT
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
53.1
0.18
1.7
70.85
40.8

Associated Gene:

Gene:
SPNS2
Ensembl Gene ID:
ENSAPLG00000008372
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008691
3408850 - 3533675
124826