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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3425495_3432219_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3425495 - 3432219
Intron Length:
6725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTACAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTATTACAACA
Flanking Amino Acid:
AAKSSIVGAYICIFIGETLL
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.6
0.58
1
71.3
38.2
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
49.7
-0
1.8
69
37.1

Associated Gene:

Gene:
SPNS2
Ensembl Gene ID:
ENSAPLG00000008372
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008691
3408850 - 3533675
124826