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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3432410_3434013_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3432410 - 3434013
Intron Length:
1604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
CNAQPCGTKDSLIFGAITCF
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
79.1
30.7
Major BPS
61.3
0.28
1
62
30.6
Major PPT
83.4
0.75
0.8
81.5
29
Minor 5ss
35.8
-1.6
3.4
49.2
47.3
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
SPNS2
Ensembl Gene ID:
ENSAPLG00000008372
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008691
3408850 - 3533675
124826