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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3438582_3439204_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3438582 - 3439204
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCATCACTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTCATCACTT
Flanking Amino Acid:
SVFYFAIPLGSGLGYITGSS
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.9
0.6
0.9
70.2
35.1
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
48.9
-0
2.1
73.15
44

Associated Gene:

Gene:
SPNS2
Ensembl Gene ID:
ENSAPLG00000008372
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008691
3408850 - 3533675
124826