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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3460760_3498795_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3460760 - 3498795
Intron Length:
38036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTATTAATG
Flanking Amino Acid:
KDSGAGLLQTVFICSFMVAA
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.6
0.8
0.7
80.2
25
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
64.1
0.3
1.6
68.96
38.5

Associated Gene:

Gene:
SPNS2
Ensembl Gene ID:
ENSAPLG00000008372
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008691
3408850 - 3533675
124826