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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_354310_356948_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
354310 - 356948
Intron Length:
2639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TGCTTCCCATGT
Flanking Amino Acid:
DINNELKKLASCYKDYMEKE
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
81.3
0.7
0.8
72.4
37.8
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
39.5
-0.7
2.1
56.99
45.5

Associated Gene:

Gene:
FKBP6
Ensembl Gene ID:
ENSAPLG00000007824
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008120
354221 - 362044
7824