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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3586067_3586658_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3586067 - 3586658
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCATTAAGG
5'SS Class:
weak_major
3'SS Sequence:
GATACAGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TTTTGCTTAATG
Flanking Amino Acid:
YVEDDRKEAEKKGQITIPPY
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.3
50.8
45.6
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
60.9
0.25
1.1
50.9
42.6
Minor 5ss
30.4
-2.2
3.9
40
40.1
Minor BPS
73.2
0.59
1.8
79.08
38

Associated Gene:

Gene:
SPNS3
Ensembl Gene ID:
ENSAPLG00000008205
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021616
3585889 - 3614279
28391