About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_358733_360017_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
358733 - 360017
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATAC
Flanking Amino Acid:
DSDAFFALTAEQQDTFPLQK
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
62.6
38.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.1
0.86
0.8
84.3
29.6
Minor 5ss
38
-1.4
3
53.5
43.7
Minor BPS
61.9
0.35
1.7
72.39
38.5

Associated Gene:

Gene:
FKBP6
Ensembl Gene ID:
ENSAPLG00000007824
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008120
354221 - 362044
7824