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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3588726_3594751_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3588726 - 3594751
Intron Length:
6026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
NWAVVTDILLYVVTPRRQST
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
SPNS3
Ensembl Gene ID:
ENSAPLG00000008205
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008527
3586652 - 3616714
30063
ENSAPLT00000048223
3583368 - 3611111
27744
ENSAPLT00000021616
3585889 - 3614279
28391
ENSAPLT00000018988
3585889 - 3614279
28391