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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3594818_3600058_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3594818 - 3600058
Intron Length:
5241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGGATAGTCACT
Flanking Amino Acid:
MAQRSITSTFIFIALGELFL
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
69.3
36.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
95.2
1.02
0.5
91.6
19.5
Minor 5ss
36.5
-1.5
3.2
51
39.8
Minor BPS
38.8
-0.8
2.4
57.89
44.8

Associated Gene:

Gene:
SPNS3
Ensembl Gene ID:
ENSAPLG00000008205
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018988
3585889 - 3614279
28391
ENSAPLT00000008527
3586652 - 3616714
30063
ENSAPLT00000048223
3583368 - 3611111
27744
ENSAPLT00000021616
3585889 - 3614279
28391