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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3600249_3604791_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3600249 - 3604791
Intron Length:
4543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CTGTGCTCAACT
Flanking Amino Acid:
CAEKSCNSSNSLIFGGITIG
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
71.5
0.48
1
66.2
39.1
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
57
0.3
2.1
75.86
46.7

Associated Gene:

Gene:
SPNS3
Ensembl Gene ID:
ENSAPLG00000008205
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048223
3583368 - 3611111
27744
ENSAPLT00000021616
3585889 - 3614279
28391
ENSAPLT00000018988
3585889 - 3614279
28391
ENSAPLT00000008527
3586652 - 3616714
30063