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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3607059_3608345_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3607059 - 3608345
Intron Length:
1287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
GTATCCTGGACC
Flanking Amino Acid:
VTGDWHWAFRVTPCLGGIAL
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.1
30.7
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
82.9
0.74
0.9
76.6
37.7
Minor 5ss
36
-1.6
2.9
40.8
45.4
Minor BPS
66.3
0.5
1.5
72.63
38

Associated Gene:

Gene:
SPNS3
Ensembl Gene ID:
ENSAPLG00000008205
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008527
3586652 - 3616714
30063