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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3608413_3609290_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3608413 - 3609290
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
CTGTCACTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTTTCTGTCACT
Flanking Amino Acid:
SVFYICIPVGSGLGYVLASS
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.2
79.9
36
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
76.7
0.6
0.9
69.3
36
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
51.6
0.13
2.4
78.9
44

Associated Gene:

Gene:
SPNS3
Ensembl Gene ID:
ENSAPLG00000008205
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008527
3586652 - 3616714
30063
ENSAPLT00000048223
3583368 - 3611111
27744
ENSAPLT00000021616
3585889 - 3614279
28391
ENSAPLT00000018988
3585889 - 3614279
28391