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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3609443_3609943_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3609443 - 3609943
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
CTTTTGTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
CTTTTTTGGACT
Flanking Amino Acid:
TLGTSFISESYHWMFFLSRG
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
66.2
40.5
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
85.9
0.81
0.8
80.7
31.4
Minor 5ss
47.1
-0.3
2.5
61.5
43.4
Minor BPS
62.3
0.47
1.5
78.78
37.9

Associated Gene:

Gene:
SPNS3
Ensembl Gene ID:
ENSAPLG00000008205
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048223
3583368 - 3611111
27744
ENSAPLT00000021616
3585889 - 3614279
28391
ENSAPLT00000018988
3585889 - 3614279
28391
ENSAPLT00000008527
3586652 - 3616714
30063