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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3610081_3611074_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3610081 - 3611074
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAATTTG
5'SS Class:
major
3'SS Sequence:
CTTGGATTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
GCCTCTTGGATT
Flanking Amino Acid:
VCLSPSPLKKSFILCYMVAA
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.3
66.2
39.9
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
71.8
0.49
0.9
62.4
43.4
Minor 5ss
42
-0.9
2.9
55.2
42.3
Minor BPS
51.8
0.14
1.5
63.68
41.4

Associated Gene:

Gene:
SPNS3
Ensembl Gene ID:
ENSAPLG00000008205
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048223
3583368 - 3611111
27744