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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3644284_3647119_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3644284 - 3647119
Intron Length:
2836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATATTTTTGATT
Flanking Amino Acid:
VLIIGPPDTLYEGGVFKAHL
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.9
32.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78
0.63
0.9
69.8
41.2
Minor 5ss
40.2
-1.1
2.8
54.6
37.1
Minor BPS
66.5
0.6
1.1
76.82
33.6

Associated Gene:

Gene:
UBE2G1
Ensembl Gene ID:
ENSAPLG00000023425
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042474
3630264 - 3652280
22017