Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_365819_366676_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

365819 - 366676

Intron Length:

858

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

TGTCTCCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

CAGTCCTGCACA

Flanking Amino Acid:

KLINNKSRIANEADVFKWVI

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

63.4

35.3

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

80.4

0.68

0.8

31.1

Minor 5ss

30.7

-2.2

3.1

41.6

38.8

Minor BPS

49.9

-0

61.26

44.6

Associated Gene:

Gene:

TRIM50

Ensembl Gene ID:

ENSAPLG00000007840

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008147

364440 - 368616

4177