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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3668228_3669617_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3668228 - 3669617
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTATTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ACTTACTGAACC
Flanking Amino Acid:
NKFQLQLLRERCEKGVMSLV
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
75
0.56
1
71.3
38.3
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
62.4
0.37
1.7
71.04
39.7

Associated Gene:

Gene:
ANKFY1
Ensembl Gene ID:
ENSAPLG00000007717
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008048
3668112 - 3688112
20001