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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3671233_3671984_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3671233 - 3671984
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTGA
5'SS Class:
major
3'SS Sequence:
ATTTGTGTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
ATCTGGTTAAAT
Flanking Amino Acid:
FLYLIEMDSQLPGKLNELDQ
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
61.7
39.4
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
75.6
0.58
0.9
70
40.8
Minor 5ss
41.5
-0.9
3.2
55.7
48.5
Minor BPS
47.6
-0.1
2.5
71.23
45.5

Associated Gene:

Gene:
ANKFY1
Ensembl Gene ID:
ENSAPLG00000007717
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008048
3668112 - 3688112
20001