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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3674095_3674845_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3674095 - 3674845
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
GCTCCAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTGCTCCAATT
Flanking Amino Acid:
ANPNMQDSKGRTPLHVSVVV
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
70.7
0.47
0.9
62.7
37.3
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
51
0.11
1.9
76.58
40.6

Associated Gene:

Gene:
ANKFY1
Ensembl Gene ID:
ENSAPLG00000007717
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008048
3668112 - 3688112
20001