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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3681009_3681560_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3681009 - 3681560
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ACTTGCTTCATT
Flanking Amino Acid:
NNLEDIASTLVRHGCDSTCW
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
52.5
0.16
2.2
73.58
44

Associated Gene:

Gene:
ANKFY1
Ensembl Gene ID:
ENSAPLG00000007717
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008048
3668112 - 3688112
20001