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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3681680_3682043_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3681680 - 3682043
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGCAC
5'SS Class:
major
3'SS Sequence:
GTGCTTTTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATTTATTAAAT
Flanking Amino Acid:
SEQIACFLIRSGCDVNSPRK
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
63.9
42.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.3
0.55
0.9
73
37.3
Minor 5ss
26.5
-2.7
3
32.8
42.2
Minor BPS
62
0.46
1.7
78.25
37

Associated Gene:

Gene:
ANKFY1
Ensembl Gene ID:
ENSAPLG00000007717
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008048
3668112 - 3688112
20001