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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3683650_3684507_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3683650 - 3684507
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGG
5'SS Class:
major
3'SS Sequence:
CTCTTTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
CTCTTTGCCACA
Flanking Amino Acid:
LKREPGAAEQVDNKGRNFLH
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
63
44.1
Major BPS
61.3
0.28
1
62
30.6
Major PPT
76.8
0.6
0.8
71.5
33
Minor 5ss
42.6
-0.8
3
55.9
48.3
Minor BPS
38.5
-0.9
2.3
49.67
42.5

Associated Gene:

Gene:
ANKFY1
Ensembl Gene ID:
ENSAPLG00000007717
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008048
3668112 - 3688112
20001