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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3685258_3685515_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3685258 - 3685515
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACTTC
5'SS Class:
major
3'SS Sequence:
TTCTACTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
AATTCTTGAAGC
Flanking Amino Acid:
FAAVDENGNNALHLAVMHGR
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
68.2
37.8
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
87
0.83
0.7
84.6
29.8
Minor 5ss
47.9
-0.2
2.9
64.2
42.8
Minor BPS
56.9
0.2
1.7
66.88
38.5

Associated Gene:

Gene:
ANKFY1
Ensembl Gene ID:
ENSAPLG00000007717
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008048
3668112 - 3688112
20001