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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3686956_3687434_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3686956 - 3687434
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TACCTCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TACCTCTTAACA
Flanking Amino Acid:
ATKQLLFRLLDMLTKEPPWC
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73.9
0.54
0.9
69.3
35.3
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
72.1
0.69
1.2
73.71
37.7

Associated Gene:

Gene:
ANKFY1
Ensembl Gene ID:
ENSAPLG00000007717
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008048
3668112 - 3688112
20001