Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_369350_369417_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

369350 - 369417

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

CGGCTGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

GCGGCGCTGACG

Flanking Amino Acid:

ERRLPLPLAKVLVYDLLFGK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

63.9

42.4

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

61.7

0.26

0.9

53.8

36.6

Minor 5ss

23.2

-3.1

3.2

28.7

43.7

Minor BPS

38.7

-1

2.3

39.44

44.4

Associated Gene:

Gene:

NSUN5

Ensembl Gene ID:

ENSAPLG00000008049

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024843

369017 - 382935

13919

ENSAPLT00000008344

369017 - 374075

5059