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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3695048_3696378_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3695048 - 3696378
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTCG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCAATTTTAATT
Flanking Amino Acid:
RGSRFWCSRQSGGVKRDWIG
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
65.7
41
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.9
0.79
0.7
80.8
31.2
Minor 5ss
43.5
-0.7
2.9
56.7
47.6
Minor BPS
64.1
0.52
1.2
72.54
39.1

Associated Gene:

Gene:
CYB5D2
Ensembl Gene ID:
ENSAPLG00000007714
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007997
3694834 - 3697152
2319