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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3704862_3705497_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3704862 - 3705497
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAAAAAT
Flanking Amino Acid:
SDGSARSHWIRLKMKPDVVL
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.1
33.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86.2
0.81
0.8
80.4
31.5
Minor 5ss
32.3
-2
3.3
44.3
43.6
Minor BPS
48.8
-0
2.2
79.82
41.4

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814
ENSAPLT00000046130
3697619 - 3754432
56814