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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3705698_3706785_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3705698 - 3706785
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTCAA
5'SS Class:
major
3'SS Sequence:
TCTGTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TCTGTTTTGACA
Flanking Amino Acid:
LLENANISQMYVQINIKRCL
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
63.2
38.7
Major BPS
54
0.1
1
59.7
32.6
Major PPT
78.7
0.64
1
75.5
38.3
Minor 5ss
30.1
-2.3
2.9
32.9
41.9
Minor BPS
62.2
0.38
1.4
68.82
38.3

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814