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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3706997_3708391_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3706997 - 3708391
Intron Length:
1395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CCTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTTCTTTGAAG
Flanking Amino Acid:
AFVHTILQNTQKALQHMPPL
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
86.5
0.82
0.7
80.3
31.8
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
70.8
0.51
1.4
75.57
36.2

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814