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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3711953_3712978_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3711953 - 3712978
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCTATATTT
Flanking Amino Acid:
SFQVTQIRIKVRRGAIGAQC
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
54.6
0.22
1.9
76.24
41.2

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814