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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3713128_3713664_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3713128 - 3713664
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
TACGTAGAAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TCTTCTATACGT
Flanking Amino Acid:
LQEFKQFLKNSCSSDDLGDD
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
54.2
0.1
1.1
48.5
42.9
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
48.1
-0
2.1
72
45.3

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814