Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_371599_371715_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

371599 - 371715

Intron Length:

117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGCTTG

5'SS Class:

major

3'SS Sequence:

TGCCATGCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGCCAT

U12 Branch Point Sequence:

TTTGGGGTCAGC

Flanking Amino Acid:

AVLQEQGSAFRLVNVFPSWP

Intron Amino Acid Position:

380

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

67.5

40.3

Major BPS

47.8

-0.1

1.6

58.2

48.3

Major PPT

64.6

0.33

0.9

38.2

Minor 5ss

48.1

-0.2

2.7

63.6

48.1

Minor BPS

-1.5

2.9

48.88

47.8

Associated Gene:

Gene:

NSUN5

Ensembl Gene ID:

ENSAPLG00000008049

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024843

369017 - 382935

13919

ENSAPLT00000008344

369017 - 374075

5059