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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3716285_3716622_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3716285 - 3716622
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
GTGTTCTTACAG
Flanking Amino Acid:
FWNFYNKLQQNPREECIFAQ
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
83
0.74
0.9
76.5
37.7
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
50.5
-0.1
1.8
56.74
44.6

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814