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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3718072_3718530_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3718072 - 3718530
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGTAA
U12 Branch Point Sequence:
CTTTGTTTCATA
Flanking Amino Acid:
LAFRSLCTHFSDQDPGGLLL
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
50.6
0.02
1.4
52.1
43.5
Major PPT
80.2
0.68
0.8
75.8
32.8
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
49.1
-0
2.1
66.01
41.8

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814