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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_371869_381796_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
371869 - 381796
Intron Length:
9928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCATGCTCACCT
Flanking Amino Acid:
ERCRDQAAVPSSLSDFTGVE
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.3
0.73
0.8
76.6
32
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
44.6
-0.3
2.2
60.42
48.8

Associated Gene:

Gene:
NSUN5
Ensembl Gene ID:
ENSAPLG00000008049
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024843
369017 - 382935
13919